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Figure 6 | BMC Bioinformatics

Figure 6

From: RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that uniquely distinguish among these viruses

Figure 6

Alignment of the three norovirus sequence groups of partition P2: GROUP_1 consists of the aligned GI sequences that include the bovine sequences while GROUP_2 consists of the aligned GII including the alphatron sequences. Group_3 consists of the murine sequences. All amino acid residues are shown using single letter alphabets. Dashes (-) indicate variable locations and dots (.) indicate insertions/deletions. The SUMMARY lines indicate the alignment results of these two groups. The X, highlighted in magenta, denote group-specific locations i.e. locations which are conserved within each group but not among the groups. Such locations distinguish among the different sequence groups and form part of the RECOVIR databases. The yellow highlighted regions denote some residues that are conserved in GI and the bovine sequences but are not identical with the corresponding GII locations. The corresponding locations that are conserved in GII and the alphatron-like sequences are highlighted in grey.

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BMC Bioinformatics

ISSN: 1471-2105

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