Table 3 Identified interval-feature patterns in the branch-point interval
From: Features generated for computational splice-site prediction correspond to functional elements
A-3mer3 [-40,-20]* | Interval occurrences | Average Weight | Total occurrences | Total Range |
|---|---|---|---|---|
--cctgac-- | 10 | 0.096 | 13 | [-34,-16] |
---ctgacc- | 9 | 0.131 | 12 | [-33,-16] |
---ctgact- | 8 | 0.082 | 11 | [-32,-16] |
-ccctga--- | 7 | 0.083 | 7 | [-32,-19] |
--gctgac-- | 7 | 0.083 | 8 | [-34,-18] |
--tctgac-- | 7 | 0.083 | 8 | [-32,-18] |
----tgaccc | 6 | 0.089 | 9 | [-32,-16] |
--actgac-- | 5 | 0.059 | 6 | [-33,-13] |
---ctgatg- | 5 | 0.068 | 7 | [-36, 18] |
-cccctc--- | 7 | 0.065 | 24 | [-35, 0] |
---cctctc- | 5 | 0.049 | 22 | [-36, 0] |
--gggagg-- | 6 | -0.041 | 23 | [-34, 14] |
--aaaaaa-- | 5 | -0.028 | 84 | [-50, 80] |