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Table 3 Identified interval-feature patterns in the branch-point interval

From: Features generated for computational splice-site prediction correspond to functional elements

A-3mer3 [-40,-20]* Interval occurrences Average Weight Total occurrences Total Range
--cctgac-- 10 0.096 13 [-34,-16]
---ctgacc- 9 0.131 12 [-33,-16]
---ctgact- 8 0.082 11 [-32,-16]
-ccctga--- 7 0.083 7 [-32,-19]
--gctgac-- 7 0.083 8 [-34,-18]
--tctgac-- 7 0.083 8 [-32,-18]
----tgaccc 6 0.089 9 [-32,-16]
--actgac-- 5 0.059 6 [-33,-13]
---ctgatg- 5 0.068 7 [-36, 18]
-cccctc--- 7 0.065 24 [-35, 0]
---cctctc- 5 0.049 22 [-36, 0]
--gggagg-- 6 -0.041 23 [-34, 14]
--aaaaaa-- 5 -0.028 84 [-50, 80]
  1. The first column shows the interval-feature patterns in the branch-point interval [-40,-20]. The second column shows the number of individual occurrences for each pattern in different positions within the specified interval. The average assigned weight is given in the third column. For comparison we include the total number of occurrences for this pattern in the complete neighbourhood ([-82, 80]) (forth column), and in the last column we show the narrowed range interval that comprises the total occurrences for each pattern.