PlnTFDB: an integrative plant transcription factor database

BMC Bioinformatics

Table 2 Quality control

Family	Reference	PPV	Sensitivity
AP2-EREBP	[39]	146/146 = 1.00	146/147 = 0.99
ARF	[40]	21/22 = 0.95	21/23 = 0.91
AUX/IAA	[40]	28/28 = 1.00	28/29 = 0.97
bHLH	[41]	122/132 = 0.92	122/154 = 0.80
bZIP	[42]	68/70 = 0.97	68/74 = 0.92
C2C2-Dof	[43]	35/36 = 0.97	35/36 = 0.97
C2C2-GATA	[44]	29/29 = 1.00	29/29 = 1.00
GRAS	[45]	32/33 = 0.97	32/33 = 0.97
MADS	[46]	99/104 = 0.95	99/108 = 0.92
MYB + MYB-related	[47]	184/209 = 0.88	184/198 = 0.93
NAC	[48]	100/101 = 0.99	100/100 = 1.00
WRKY	[49]	71/72 = 0.99	71/72 = 0.99

The Positive Predictive Value (PPV) and the Sensitivity were determined for arbitrarily selected A. thaliana TF families. For the PPV a deviation from 1.00 means the inclusion of false positives. For the Sensitivity deviations from 1.00 indicate exclusion of true members (false negatives). Families with both values larger than 0.90 appear in bold face.

ISSN: 1471-2105