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Table 3 Computation Times for Comparison

From: SABERTOOTH: protein structural alignment based on a vectorial structure representation

Algorithm

CPU time/s

time rel.

SABERTOOTH

1726.3

4.23

MAMMOTH

408.4

1.00

MAMMOTH-mult

832.7

2.04

DaliLite

10902

26.70

TM-align

611.7

1.50

CE

2353

5.76

SHEBA

3533

8.65

  1. Computation times for computing all of the 3566 alignment examples from the test set on an Intel(R) Xeon(TM) CPU 2.80 GHz are show as absolut values and relative to the speed benchmark MAMMOTH (pairwise).
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BMC Bioinformatics

ISSN: 1471-2105

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