Estimation of the transition parameters and percentage of SNPs in state 0 in the real data. A. Boxplots for the p-parameter. B. Boxplots for the r-parameter. C. Boxplots for the percentage of estimated SNPs in state 0 (normal state). BN: Bladder Normal samples; HN: Hapmap Normal samples; PN: Prostate Normal samples; BT: Bladder Tumour samples; PT: Prostate Tumour samples.