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Table 2 Alignment Length and Gap Percentage and by Alignment Tool

From: Improving model construction of profile HMMs for remote homology detection through structural alignment

 

Length (residues)

Gap%

CLUSTALW

318

41

TCOFFEE

474

59

MAFFT

382

51

PROBCONS

540

59

3DCOFFEE

495

60

MAMMOTH

413

53

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BMC Bioinformatics

ISSN: 1471-2105

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