Table 3 The performance of PSSM based SVM models on proteins with and without PSI-BLAST hits at e-value 0.1 against DNAset. These models were trained and tested on DNAset.
From: Identification of DNA-binding proteins using support vector machines and evolutionary profiles
Threshold | With PSI-BLAST hit | Without PSI-BLAST hit | ||
|---|---|---|---|---|
| Â | Sensitivity | Specificity | Sensitivity | Specificity |
-1 | 95.83 | 48.21 | 97.54 | 42.78 |
-0.9 | 95.83 | 53.57 | 96.72 | 44.33 |
-0.8 | 95.83 | 53.57 | 96.72 | 45.88 |
-0.7 | 95.83 | 57.14 | 95.90 | 48.97 |
-0.6 | 91.67 | 62.50 | 95.90 | 51.55 |
-0.5 | 91.67 | 64.29 | 95.08 | 54.12 |
-0.4 | 91.67 | 66.07 | 93.44 | 57.73 |
-0.3 | 87.50 | 66.07 | 92.62 | 60.31 |
-0.2 | 83.33 | 69.64 | 91.80 | 63.40 |
-0.1 | 83.33 | 73.21 | 89.34 | 66.49 |
0 | 83.33 | 76.79 | 86.89 | 69.07 |
0.1 | 83.33 | 82.14 | 83.61 | 71.65 |
0.2 | 83.33 | 83.93 | 80.33 | 75.77 |
0.3 | 83.33 | 83.93 | 77.87 | 78.87 |
0.4 | 75.00 | 85.71 | 73.77 | 81.44 |
0.5 | 75.00 | 85.71 | 69.67 | 82.99 |
0.6 | 75.00 | 89.29 | 64.75 | 85.05 |
0.7 | 75.00 | 92.86 | 60.66 | 88.66 |
0.8 | 62.50 | 94.64 | 56.56 | 89.69 |
0.9 | 62.50 | 96.43 | 50.00 | 91.75 |
1 | 54.17 | 96.43 | 45.08 | 93.30 |