From: Predicting and improving the protein sequence alignment quality by support vector regression
 |  |  |  | Average MaxSub | |||
---|---|---|---|---|---|---|---|
Open | Extension | Baseline | 2nd | All | Family | Superfamily | Fold |
5 | 1 | 0 | 0 | 0.2104 | 0.5930 | 0.1636 | 0.0447 |
5 | 1 | 1 | 0 | 0.2172 | 0.6073 | 0.1679 | 0.0492 |
5 | 2 | 0 | 0 | 0.2130 | 0.6062 | 0.1566 | 0.0477 |
5 | 2 | 1 | 0 | 0.2105 | 0.6060 | 0.1494 | 0.0470 |
9 | 1 | 0 | 0 | 0.2200 | 0.6080 | 0.1774 | 0.0488 |
9 | 1 | 1 | 0 | 0.2208 | 0.6133 | 0.1716 | 0.0514 |
9 | 2 | 0 | 0 | 0.2171 | 0.6115 | 0.1621 | 0.0505 |
9 | 2 | 1 | 0 | 0.2131 | 0.6104 | 0.1508 | 0.0494 |
13 | 1 | 0 | 0 | 0.2176 | 0.6096 | 0.1696 | 0.0479 |
13 | 1 | 1 | 0 | 0.2158 | 0.6109 | 0.1609 | 0.0487 |
13 | 2 | 0 | 0 | 0.2131 | 0.6102 | 0.1530 | 0.0481 |
13 | 2 | 1 | 0 | 0.2088 | 0.6076 | 0.1429 | 0.0467 |
5 | 1 | 0 | 1 | 0.2210 | 0.5950 | 0.1705 | 0.0619 |
5 | 1 | 1 | 1 | 0.2298 | 0.6070 | 0.1784 | 0.0696 |
5 | 2 | 0 | 1 | 0.2283 | 0.6066 | 0.1738 | 0.0696 |
5 | 2 | 1 | 1 | 0.2286 | 0.6089 | 0.1713 | 0.0706 |
9 | 1 | 0 | 1 | 0.2342 | 0.6129 | 0.1853 | 0.0718 |
9 | 1 | 1 | 1 | 0.2386 | 0.6176 | 0.1877 | 0.0771 |
9 | 2 | 0 | 1 | 0.2373 | 0.6175 | 0.1837 | 0.0770 |
9 | 2 | 1 | 1 | 0.2345 | 0.6169 | 0.1770 | 0.0755 |
13 | 1 | 0 | 1 | 0.2355 | 0.6139 | 0.1851 | 0.0741 |
13 | 1 | 1 | 1 | 0.2374 | 0.6165 | 0.1852 | 0.0767 |
13 | 2 | 0 | 1 | 0.2356 | 0.6163 | 0.1808 | 0.0759 |
13 | 2 | 1 | 1 | 0.2319 | 0.6143 | 0.1730 | 0.0737 |
5 | 1 | 0 | 2 | 0.2111 | 0.5765 | 0.1572 | 0.0586 |
5 | 1 | 1 | 2 | 0.2208 | 0.5935 | 0.1629 | 0.0669 |
5 | 2 | 0 | 2 | 0.2216 | 0.5950 | 0.1609 | 0.0691 |
5 | 2 | 1 | 2 | 0.2248 | 0.6017 | 0.1611 | 0.0725 |
9 | 1 | 0 | 2 | 0.2247 | 0.6014 | 0.1676 | 0.0684 |
9 | 1 | 1 | 2 | 0.2311 | 0.6090 | 0.1719 | 0.0754 |
9 | 2 | 0 | 2 | 0.2324 | 0.6101 | 0.1717 | 0.0777 |
9 | 2 | 1 | 2 | 0.2327 | 0.6106 | 0.1706 | 0.0788 |
13 | 1 | 0 | 2 | 0.2290 | 0.6073 | 0.1713 | 0.0723 |
13 | 1 | 1 | 2 | 0.2337 | 0.6110 | 0.1750 | 0.0780 |
13 | 2 | 0 | 2 | 0.2343 | 0.6122 | 0.1741 | 0.0793 |
13 | 2 | 1 | 2 | 0.2332 | 0.6120 | 0.1707 | 0.0792 |
5 | 1 | 0 | 0.5 | 0.2214 | 0.5979 | 0.1738 | 0.0593 |
5 | 1 | 1 | 0.5 | 0.2288 | 0.6094 | 0.1801 | 0.0652 |
5 | 2 | 0 | 0.5 | 0.2260 | 0.6095 | 0.1729 | 0.0638 |
5 | 2 | 1 | 0.5 | 0.2247 | 0.6104 | 0.1680 | 0.0635 |
9 | 1 | 0 | 0.5 | 0.2337 | 0.6141 | 0.1888 | 0.0678 |
9 | 1 | 1 | 0.5 | 0.2359 | 0.6183 | 0.1881 | 0.0709 |
9 | 2 | 0 | 0.5 | 0.2328 | 0.6174 | 0.1807 | 0.0693 |
9 | 2 | 1 | 0.5 | 0.2291 | 0.6170 | 0.1717 | 0.0672 |
13 | 1 | 0 | 0.5 | 0.2329 | 0.6150 | 0.1856 | 0.0678 |
13 | 1 | 1 | 0.5 | 0.2323 | 0.6162 | 0.1809 | 0.0687 |
13 | 2 | 0 | 0.5 | 0.2295 | 0.6160 | 0.1739 | 0.0672 |
13 | 2 | 1 | 0.5 | 0.2251 | 0.6139 | 0.1645 | 0.0647 |
Mean | 0.2261 | 0.6090 | 0.1713 | 0.0651 |