Table 3 The percentage of the edges (pocket pairs) related to similar GO terms in pocket similarity network which is constructed by using the p-value of structure oRMSD similarity between two pockets as the threshold.
From: Predicting gene ontology functions from protein's regional surface structures
Threshold | 1.0 × 10-1 | 1.0 × 10-2 | 1.0 × 10-3 | 1.0 × 10-4 | 1.0 × 10-5 |
|---|---|---|---|---|---|
Pocket pairs | 2354 | 1182 | 757 | 618 | 567 |
GO annotated pairs | 1786 | 922 | 617 | 516 | 483 |
Similar pairs | 626 | 564 | 515 | 491 | 475 |
Percentage | 35.05% | 61.17% | 83.47% | 95.16% | 98.34% |