Skip to main content

Table 1 Average ranking of 5 monoPWM models (BVH, LOD, MCH, NLG and optimized NLG (OPT)) calculated for corresponding FP rates (matrix length 15 nt).

From: Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions

TP rate, %

BVH

LOD

MCH

NLG

OPT

50

3.78

2.00

4.78

2.78

1.67

60

3.11

2.44

4.67

2.44

2.33

70

4.11

2.89

4.22

2.22

1.56

80

3.11

2.78

4.56

3.00

1.56

90

4.11

3.00

2.89

3.00

2.00

100

3.44

3.22

3.67

2.44

2.22

  1. The average ranks calculated on the basis of nine TFBS types (see methods, Sequence data)
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us