Skip to main content

Table 2 Patterns for method 0, recognition of any IFN-inducible DNA region (stimulation by any IFN)

From: Recognition of interferon-inducible sites, promoters, and enhancers

Site 1 Site 2 W = F1/F2 (weight for the pattern)
strongISGF3 (b)*
from -350 to +350**
- 8.57
strong ISGF3 (+)
from -350 to +350
- 10.48
ISGF3 (b)
from -200 to +50
- 9.41
ISGF3 (+)
from -200 to +50
ISGF3 (+)
from -500 to +1
9.41
strong ISGF3 (+)
from +130 to +350
ISGF3 (+)
from +130 to +350
3.14
strong STAT1 (-)
from -350 to +350
- 9.36
STAT1 (-)
from -350 to +350
- 3.66
STAT1 (-)
from -200 to +50
STAT1 (+)
from -350 to +350
3.76
STAT1 (-)
from +130 to +350
- 3.22
strong IRF1 (b)
from -350 to +350
- 5.0
IRF1 (-)
from -650 to +350
- 5.18
IRF1 (-)
from -200 to +50
IRF1 (-)
from +130 to +350
3.50
AP1 (+)
from -500 to -300
- 1.20
AP1 (b)
from -300 to +1
- 1.13
NF-Y (-)
from -150 to +50
- 1.28
OCT1 (+)
from -300 to +50
- 1.31
NF-κB (-)
from -300 to +1
NF-κB (+)
from -300 to +1
5.16
ISGF3 (b)
from -200 to +50
STAT1 (+)
from -350 to +350
3.64
STAT1 (b)
from +130 to +350
TATA (+)
from -100 to +70
3.50
STAT1 (b)
from -300 to +1
TATA (+)
from -100 to +70
13.0
STAT1 (-)
from +130 to +350
TATA (+)
from -100 to +70
3.0
AP1 (b)
from -300 to +1
TATA (+)
from -100 to +70
2.0
STAT1 (+)
from -350 to +350
IRF1 (b)
from -300 to +1
3.74
IRF1 (+)
from -350 to +350
ISGF3 (b)
from -500 to +1
5.1
strong ISGF3 (b)
from -600 to +350
STAT1 (b)
from -650 to +350
10.8
ISGF3 (b)
from -200 to +50
STAT1 (b)
from -650 to +350
5.8
strong IRF1 (b)
from -650 to +350
STAT1 (b)
from -650 to +350
10.8
strong IRF1 (b)
from -650 to +350
strong ISGF3 (b)
from -600 to +350
5.8
ISGF3 (b)
from -200 to +50
strong IRF1 (b)
from -650 to +350
3.8
strong ISGF3 (b)
from -600 to +350
IRF1 (b)
from -500 to +1
4.8
ISGF3 (b)
from -200 to +50
IRF1 (b)
from -500 to +1
4.8
NF-κB (b)
from -500 to +1
strong IRF1 (b)
from -650 to +350
8.8
NF-κB (b)
from -500 to +1
strong IRF1 (b)
from -500 to +1
3.8
NF-κB (b)
from -500 to +1
AP1 (b)
from -500 to +1
1.8
IRF1 (b)
from -200 to +50
NF-κB (b)
from -500 to +1
2.0
AP1 (b)
from -500 to +1
strong IRF1 (b)
from -650 to +350
3.8
AP1 (b)
from -500 to +1
IRF1 (b)
from -500 to +1
1.8
ISGF3 (b)
from -200 to +50
OCT1 (b)
from -500 to +1
1.4
STAT1 (+)
from -300 to +1
OCT1 (b)
from -500 to +1
1.3
  1. *b (both) - any direction of a site; + forward DNA strand; - reverse DNA strand;
  2. ** Location of a site with respect to the TSS