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Table 3 Patterns for method 1, recognition of DNA regions induced by type I IFNs (IFNα, IFNβ)

From: Recognition of interferon-inducible sites, promoters, and enhancers

Site 1 Site 2 W = F1/F2 (weight for the pattern)
strongISGF3 (b)*
from -350 to +350**
- 3.25
ISGF3 (b)
from -200 to +50
- 3.89
ISGF3 (b)
from +130 to +350
- 1.83
STAT1 (+)
from -350 to +350
- 2.29
STAT1 (b)
from -300 to +1
- 1.68
STAT1 (-)
from +130 to +350
- 1.67
strong IRF1 (b)
from -350 to +350
- 2.76
strong IRF1 (+)
from -350 to +350
- 2.0
IRF1 (+)
from +130 to +350
- 2.16
strong NF-κB (-)
from -300 to +1
NF-κB (-)
from -300 to +1
1.8
IRF1 (b)
from -350 to +350
ISGF3 (b)
from -200 to +50
7.64
IRF1 (b)
from -500 to -300
ISGF3 (+)
from -200 to +50
4.25
IRF1 (b)
from -300 to +1
STAT1 (b)
from -350 to +350
9.4
ISGF3 (b)
from -200 to +50
AP1 (b)
from -500 to +1
3.74
IRF1 (b)
from -200 to +50
GATA1 (b)
from -600 to +1
3.45
IRF1 (+)
from -350 to +350
GATA1 (b)
from +45 to +350
2.1
ISGF3 (b)
from -200 to +50
OCT1 (b)
from -500 to +1
2.3
ISGF3 (b)
from -200 to +50
GATA1 (b)
from -600 to +1
2.35
ISGF3 (b)
from -200 to +50
AP1 (b)
from -500 to +1
5.31
ISGF3 (b)
from -200 to +50
OCT1 (b)
from -500 to +1
1.92
STAT1 (b)
from -350 to +350
ISGF3 (b)
from -200 to +50
4.53
STAT1 (b)
from -500 to +1
GATA1 (b)
from +45 to +350
1.92
STAT1 (+)
from -350 to +350
OCT1 (b)
from -500 to +1
2.66
  1. *b (both) - any direction of a site; + forward DNA strand; - reverse DNA strand;
  2. ** Location of a site with respect to the TSS