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Table 2 List of pathways for D. melanogaster dataset. List of pathways (from the KEGG database) that include at least 20% of genes whose expression pattern has changed significantly upon re-feeding in the D. melanogaster dataset

From: Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation

KEGG ID

Pathway Description

path:dme00010

Glycolysis/Gluconeogenesis

path:dme00030

Pentose phosphate pathway

path:dme00051

Fructose and mannose metabolism

path:dme00052

Galactose metabolism

path:dme00053

Ascorbate and aldarate metabolism

path:dme00062

Fatty acid biosynthesis (path 2)

path:dme00071

Fatty acid metabolism

path:dme00120

Bile acid biosynthesis

path:dme00190

Oxidative phosphorylation

path:dme00230

Purine metabolism

path:dme00240

Pyrimidine metabolism

path:dme00251

Glutamate metabolism

path:dme00252

Alanine and aspartate metabolism

path:dme00260

Glycine, serine and threonine metabolism

path:dme00280

Valine, leucine and isoleucine degradation

path:dme00290

Valine, leucine and isoleucine biosynthesis

path:dme00310

Lysine degradation

path:dme00330

Arginine and proline metabolism

path:dme00340

Histidine metabolism

path:dme00350

Tyrosine metabolism

path:dme00361

Gamma-Hexachlorocyclohexane degradation

path:dme00380

Tryptophan metabolism

path:dme00410

Beta-Alanine metabolism

path:dme00440

Aminophosphonate metabolism

path:dme00500

Starch and sucrose metabolism

path:dme00562

Inositol phosphate metabolism

path:dme00564

Glycerophospholipid metabolism

path:dme00600

Glycosphingolipid metabolism

path:dme00620

Pyruvate metabolism

path:dme00624

1- and 2- Methylnaphthalene degradation

path:dme00625

Tetrachloroethene degradation

path:dme00632

Benzoate degradation via CoA ligation

path:dme00640

Propanoate metabolism

path:dme00650

Butanoate metabolism

path:dme00670

One carbon pool by folate

path:dme00740

Riboflavin metabolism

path:dme00790

Folate biosynthesis

path:dme00903

Limonene and pinene degradation

path:dme00920

Sulfur metabolism

path:dme00930

Caprolactam degradation

path:dme00970

Aminoacyl- tRNA biosynthesis

path:dme03020

RNA polymerase

path:dme03050

Proteasome

path:dme03060

Protein export

path:dme04070

Phosphatidylinositol signaling system