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Table 2 Alignment methods used to measure computational properties of Mumsa.

From: Automatic extraction of reliable regions from multiple sequence alignments

Method Description/Options
Kalign default parameters
ClustalW version 1.83 default parameters
-quicktree option
T-Coffee [23] default parameters
Muscle version 3.6 default parameters
two iterations: -maxiters 1 -diags -sv -distance1
Probcons version 1.11 default parameters
Dialign version 2.2.1 default parameters
Mafft version 5.8613 -retree 1
-retree 2
-maxiterate 1000
-maxiterate 1000 -globalpair
-maxiterate 1000 -localpair
-maxiterate 1000 -genafpair