Table 2 Alignment methods used to measure computational properties of Mumsa.
From: Automatic extraction of reliable regions from multiple sequence alignments
Method | Description/Options |
|---|---|
Kalign | default parameters |
ClustalW version 1.83 | default parameters |
“ | -quicktree option |
T-Coffee [23] | default parameters |
Muscle version 3.6 | default parameters |
“ | two iterations: -maxiters 1 -diags -sv -distance1 |
Probcons version 1.11 | default parameters |
Dialign version 2.2.1 | default parameters |
Mafft version 5.8613 | -retree 1 |
“ | -retree 2 |
“ | -maxiterate 1000 |
“ | -maxiterate 1000 -globalpair |
“ | -maxiterate 1000 -localpair |
“ | -maxiterate 1000 -genafpair |