Table 9 Results: Level Specific Thresholds. The table shows for example that we find improvements at level 2 for both MF and BP but not for level 3.
From: GO for gene documents
Hierarchy | Split | Level | Original FScore | Threshold | Final FScore |
|---|---|---|---|---|---|
MF | 1 | 2 | 0.3299 | -0.8 | 0.3665 |
MF | 2 | 2 | 0.2782 | -0.83 | 0.2973 |
MF | 3 | 2 | 0.3298 | -0.78 | 0.373 |
MF | 4 | 2 | 0.3484 | -0.81 | 0.373 |
MF | 5 | 2 | 0.3016 | -0.78 | 0.3263 |
MF | avg | 2 | 0.3176 | na | 0.341 (+7.4%) |
MF | 1 | 3 | 0.3347 | -0.87 | 0.3063 |
MF | 2 | 3 | 0.3178 | -0.84 | 0.3301 |
MF | 3 | 3 | 0.4243 | -0.88 | 0.3760 |
MF | 4 | 3 | 0.4263 | -0.87 | 0.3823 |
MF | 5 | 3 | 0.3444 | -0.86 | 0.3464 |
MF | avg | 3 | 0.3695 | na | 0.3482 (-5.8%) |
BP | 1 | 2 | 0.2542 | -0.87 | 0.2542 |
BP | 2 | 2 | 0.2951 | -0.89 | 0.2989 |
BP | 3 | 2 | 0.2261 | -0.89 | 0.2027 |
BP | 4 | 2 | 0.1609 | -0.87 | 0.2319 |
BP | 5 | 2 | 0.1507 | -0.88 | 0.1494 |
BP | avg | 2 | 0.2174 | na | 0.2274 (+4.6%) |
BP | 1 | 3 | 0.2916 | -0.86 | 0.3020 |
BP | 2 | 3 | 0.3145 | -0.83 | 0.3455 |
BP | 3 | 3 | 0.3496 | -0.82 | 0.3030 |
BP | 4 | 3 | 0.3128 | -0.83 | 0.3164 |
BP | 5 | 3 | 0.3209 | -0.83 | 0.3529 |
BP | avg | 3 | 0.3179 | na | 0.324 (+1.9%) |