TRANSFAC PWMs | Custom PWMs | |||
---|---|---|---|---|
Average nCC | Highest nCC | Average nCC | Highest nCC | |
Number of sequences | -0.23 | -0.16 | -0.23 | -0.05 |
Length of shortest sequence | 0.30 | 0.18 | 0.30 | 0.13 |
Average sequence length | 0.40 | 0.33 | 0.42 | 0.43 |
Total sequence set length | -0.19 | -0.12 | -0.18 | -0.02 |
Number of module instances | -0.38 | -0.32 | -0.40 | -0.19 |
Size of smallest module | 0.61 | 0.69 | 0.67 | 0.73 |
Size of largest module | 0.26 | 0.34 | 0.19 | 0.35 |
Average module size | 0.60 | 0.68 | 0.59 | 0.70 |
Module size standard deviation | 0.23 | 0.29 | 0.13 | 0.29 |
IC-content (lowest) | 0.46 | 0.45 | 0.73 | 0.47 |
IC-content (total) | 0.75 | 0.73 | 0.78 | 0.54 |
Module/background-ratio | 0.53 | 0.61 | 0.51 | 0.63 |