Table 3 Example genes correctly predicted by DISPattern but not predicted by BBH
From: A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Gene(id) | COG | Pattern | Occurrence |
|---|---|---|---|
BP0202 (id: 33591446), BP0203 (id: 33591447), BP0210 (id: 33591454), BP0211 (id: 33591455) | COG2801 Transposase and inactivated derivatives | {COG2801 COG2801} | NC_005090 NC_002662 NC_004369 NC_002929 NC_003295 NC_003902 NC_004741 NC_004337 |
BP0153 (id: 33591402) | COG3565 Predicted dioxygenase of extradiol dioxygenase family | {COG0111 COG0583 COG0642 COG3019 COG3565} | NC_002929 NC_002928 NC_002927 |
BP0778 (id: 33591402) | COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II | {COG0318 COG0604 COG1802 COG4625} | NC_002929 NC_002928 NC_002927 |