Table 1 Selected families from the HOMSTRAD database for testing the performance of stochastic multiple sequence alignment methods
From: How reliably can we predict the reliability of protein structure predictions?
Family name | Class | Number of sequences | Average length | Average sequence id |
|---|---|---|---|---|
Xylose isomerase | Alpha beta barrel | 6 | 388 | 69% |
Annexin | All alpha | 6 | 317 | 57% |
Calcium-binding protein – parvalbumin-like | All alpha | 7 | 107 | 56% |
Starch binding domain | All beta | 8 | 105 | 52% |
Glycosyl hydrolase family 22 (lysozyme) | Alpha+beta | 12 | 126 | 51% |
Legume lectin | All beta | 12 | 234 | 50% |
Papain family cysteine proteinase | Alpha+beta | 13 | 223 | 40% |
Subtilase | Alpha/beta | 11 | 294 | 40% |
Src homology 2 domains | Alpha+beta | 11 | 105 | 35% |
C-type lectin | Alpha+beta | 8 | 126 | 27% |
Halo-peroxidase | Alpha/beta | 9 | 286 | 25% |
Response regulator receiver domain | Alpha/beta | 13 | 122 | 25% |