Table 2 Biological categories identified by EASE. NS = not significant
From: Conditional clustering of temporal expression profiles
Category analysis with EASE | Total genes in clusters | Common genes in clusters | Specific non-overlapping genes for each stimulation | ||
|---|---|---|---|---|---|
| Â | All | Overlap | CD3/CD28 | PMA/lo | PHA |
DNA binding | 0.03 | NS | 0.07 | NS | 0.009 |
TF and Immune-Hs | 0.03 | NS | 0.007 | NS | 0.06 |
TF-immune-DNA binding-Hs | NS | NS | 0.007 | NS | NS |
TF binding | 0.03 | NS | 0.048 | NS | NS |
DNA synthesis | e-5 | 0.0004 | 0.003 | 0.003 | 0.03 |
Chromatin | 0.01 | NS | 0.02 | 0.047 | 0.001 |
Cell cycle | e-23 | e-7 | e-13 | e-13 | e-17 |