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Table 1 Top 30 probes. Thirty probes of highest value v(s). 1st column: gene name in Hugo Gene nomenclature; 2nd column: reference of the Affymetrix DNA probe; 3rd column, v(s): probe valuation; 4th to 6th columns, p(s), n(s), c(s): numbers of pcr and nopcr correct predictions and total number c(s) = p(s) + n(s) of correct predictions for the 21 PCR and 61 NoPCR cases of the learning set.

From: Prediction of the outcome of preoperative chemotherapy in breast cancer using DNA probes that provide information on both complete and incomplete responses

Gene Probe v(s) p(s) n(s) c(s) p value (t test) rank among probe sets according to p value by t test
BTG3 213134_x_at 0.61 12 40 52 2,96E-05 58
BTG3 205548_s_at 0.61 12 40 52 3,31E-05 62
GATA3 209604_s_at 0.59 15 29 44 0,00020015 148
GATA3 209603_at 0.49 12 26 38 0,00029983 186
THRAP2 212207_at 0.46 8 34 42 2,56E-08 3
SCCPDH 201826_s_at 0.46 12 22 34 0,00033299 194
SIL 205339_at 0.45 10 27 37 0,00049604 233
KRT7 209016_s_at 0.45 6 38 44 0,00248585 539
MCM5 201755_at 0.45 7 35 42 0,00281786 567
NME3 204862_s_at 0.44 10 25 35 2,45E-05 52
METRN 219051_x_at 0.44 11 22 33 1,71E-06 19
PDE4B 211302_s_at 0.43 9 27 36 0,00824095 1062
PHF15 212660_at 0.42 7 32 39 2,83E-05 57
SSR1 200891_s_at 0.42 7 32 39 0,00187004 466
PISD 202392_s_at 0.42 11 20 31 6,61E-05 92
MELK 204825_at 0.41 8 28 36 0,00012238 120
CA12 215867_x_at 0.41 10 22 32 4,42E-05 74
CA12 214164_x_at 0.41 10 22 32 4,70E-05 77
MAPK3 212046_x_at 0.41 10 22 32 9,07E-06 31
GATA3 209602_s_at 0.41 13 13 26 0,00068129 269
BBS4 212745_s_at 0.41 3 42 45 1,25E-07 4
DAPK1 203139_at 0.41 9 24 33 0,0006761 266
SAS 203226_s_at 0.40 7 29 36 8,70E-05 106
FLJ10916 219044_at 0.40 8 26 34 1,30E-06 15
E2F3 203693_s_at 0.40 8 26 34 0,00044243 219
AHNAK 220016_at 0.40 9 23 32 0,0001449 129
KLHDC3 214383_x_at 0.40 9 23 32 0,00071442 279
SFRS12 212721_at 0.40 9 23 32 5,34E-05 87
SRPK1 202200_s_at 0.39 6 31 37 0,00067356 265
CXCR4 217028_at 0.39 8 25 33 0,00098699 339