Figure 3
From: A high-throughput pipeline for designing microarray-based pathogen diagnostic assays
![Figure 3](http://media.springernature.com/full/springer-static/image/art%3A10.1186%2F1471-2105-9-185/MediaObjects/12859_2007_Article_2170_Fig3_HTML.jpg)
An alignment with a long near-contiguous match. In the alignment, the longest contiguous match is only 17 bp, but the longest near-contiguous match with one mismatch is 27 bp.