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Table 12 Annotations of biological process ontology for biclusters identified by the proposed algorithm for multiplicative models at p-value < 0.001.

From: Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization

Bicluster index Annotation P-value Corrected P-value Genes
1 ribosomal large subunit biogenesis and assembly 5.83E-06 1.97E-03 YAL025C, YBR267W, YDR091C, YNL110C, YNL163C, YOR272W, YPL211W
  tRNA methylation 1.94E-04 6.55E-02 YBL024W, YBR061C, YDR165W, YNR046W, YOL093W, YOL124C
  processing of 20S pre-rRNA 1.80E-05 6.05E-03 YDL153C, YDL166C, YDR449C, YEL026W, YJL191W, YJR002W, YLR068W, YLR192C, YLR222C, YML093W, YMR093W, YOR056C, YPR137W
  transcription from RNA polymerase III promoter 1.02E-04 3.45E-02 YBR154C, YDL150W, YDR045C, YER148W, YLR223C, YNL113W, YNR003C, YOR224C
  35S primary transcript processing 6.37E-06 2.15E-03 YBL004W, YCL031C, YCL059C, YDR339C, YGR090W, YJR002W, YKR060W, YLL008W, YLR051C, YLR186W, YLR430W, YNR038W, YOL021C, YOR145C, YPR112C, YPR137W
  transcription from RNA polymerase I promoter 9.82E-04 3.31E-01 YBL014C, YBR154C, YDR156W, YER148W, YNL113W, YOR224C, YOR341W
  rRNA processing 5.33E-04 1.80E-01 YBR142W, YBR257W, YCL059C, YDR365C, YDR478W, YGR159C, YLR223C, YMR049C, YMR290C, YOL144W, YOR145C, YPL211W
  ribosome biogenesis and assembly 1.09E-15 3.66E-13 YAL025C, YBL024W, YBL054W, YBR034C, YBR084W, YBR142W, YBR267W, YCL059C, YDL153C, YDL167C, YDR060W, YDR165W, YDR300C, YDR312W, YDR365C, YDR449C, YDR465C, YEL026W, YHL039W, YJR002W, YJR066W, YKL143W, YKL191W, YKR056W, YKR060W, YLL008W, YLR186W, YML093W, YMR093W, YMR131C, YMR290C, YNL110C, YNL113W, YNL132W, YNL175C, YNR003C, YNR038W, YNR053C, YOL077C, YOL124C, YOL144W, YOR056C, YOR145C, YOR206W, YOR272W, YPL211W, YPL212C, YPL226W
  mRNA export from nucleus 3.51E-04 1.18E-01 YBR034C, YDL116W, YDR432W, YER107C, YJL140W, YKL057C, YKL068W, YKR002W, YKR095W, YMR308C, YOR098C
5 nucleotide-excision repair 1.88E-04 1.97E-02 YBR088C, YDL164C, YJL173C, YNL312W
  DNA recombination 1.47E-05 1.54E-03 YDL164C, YJL173C, YML061C, YNL312W
  DNA replication, synthesis of RNA primer 6.91E-05 7.25E-03 YJL173C, YKL045W, YNL312W
  double-strand break repair via homologous recombination 8.96E-04 9.41E-02 YER147C, YJL173C, YNL312W
7 arabinose catabolic process 3.55E-04 1.03E-02 YHR104W, YOR120W
  D-xylose catabolic process 3.55E-04 1.03E-02 YHR104W, YOR120W
  protein refolding 1.22E-05 3.55E-04 YBR169C, YLL026W, YPL240C
15 protein refolding 2.41E-06 6.74E-05 YAL005C, YBR169C, YPL240C
21 ribosome biogenesis and assembly 2.26E-04 1.26E-02 YAL025C, YBR238C, YBR267W, YDL031W, YDR083W, YDR184C, YIR026C, YKL078W
24 Glycolysis 3.40E-05 4.15E-03 YAL038W, YCR012W, YDR050C, YJR009C, YKL060C, YKL152C
  translational elongation 4.41E-09 5.38E-07 YAL003W, YBR118W, YDL081C, YDL130W, YDR382W, YDR385W, YLR249W, YLR340W, YOL039W
  regulation of translational fidelity 1.61E-08 1.97E-06 YBR048W, YBR189W, YDL229W, YDR025W, YGR118W, YNL209W, YPL081W
  ribosomal small subunit assembly and maintenance 4.58E-07 5.59E-05 YBR048W, YCR031C, YDR025W, YDR447C, YGR214W, YLR048W, YLR167W, YML024W
  ribosomal large subunit assembly and maintenance 1.58E-04 1.93E-02 YDR418W, YLR075W, YLR340W, YLR448W, YML073C, YOL127W, YPR102C
  translation 6.16E-69 7.51E-67 YBL027W, YBL038W, YBL072C, YBL092W, YBR031W, YBR048W, YBR181C, YBR189W, YBR191W, YCR031C, YDL061C, YDL075W, YDL081C, YDL082W, YDL083C, YDL130W, YDL136W, YDL191W, YDL229W, YDR012W, YDR025W, YDR064W, YDR382W, YDR418W, YDR447C, YDR450W, YDR471W, YDR500C, YER074W, YER102W, YER117W, YER131W, YGR118W, YGR214W, YHR141C, YIL069C, YJL136C, YJL177W, YJL189W, YJL190C, YJR123W, YJR145C, YKL006W, YKL056C, YKL156W, YKL180W, YKR057W, YKR094C, YLL045C, YLR029C, YLR048W, YLR075W, YLR167W, YLR185W, YLR325C, YLR333C, YLR340W, YLR344W, YLR388W, YLR406C, YLR441C, YLR448W, YML024W, YML026C, YML063W, YML073C, YMR121C, YMR143W, YMR194W, YMR230W, YMR242C, YNL067W, YNL096C, YNL162W, YNL209W, YNL301C, YNL302C, YOL039W, YOL040C, YOL127W, YOR167C, YOR234C, YOR293W, YOR312C, YOR369C, YPL081W, YPL090C, YPL143W, YPL198W, YPR043W, YPR102C
  telomere maintenance via recombination 5.04E-04 6.14E-02 YDR545W, YER190W, YLR467W, YNL339C, YPL283C
31 nucleotide-excision repair 3.95E-04 2.05E-02 YAR007C, YDL164C, YNL312W
  DNA recombination 6.57E-05 3.42E-03 YAR007C, YDL164C, YNL312W
  DNA replication, synthesis of RNA primer 9.46E-04 4.92E-02 YAR007C, YNL312W
  mitotic sister chromatid cohesion 6.18E-05 3.21E-03 YDL003W, YFL008W, YIL026C, YMR078C
  DNA strand elongation during DNA replication 7.82E-07 4.06E-05 YAR007C, YKL108W, YLR103C, YNL312W
34 NADH oxidation 1.25E-05 9.00E-04 YBR145W, YML120C, YMR145C, YOL059W
35 transposition, RNA-mediated 3.41E-06 1.36E-04 YCL020W, YER160C, YJR026W, YJR028W, YML040W, YOR142W
36 glycine catabolic process 1.94E-05 9.31E-04 YAL044C, YDR019C, YMR189W
  one-carbon compound metabolic process 4.79E-05 2.30E-03 YAL044C, YDR019C, YMR189W
41 karyogamy during conjugation with cellular fusion 4.10E-04 3.86E-02 YCL055W, YNL313C, YPL192C
  ribosome biogenesis and assembly 2.32E-05 2.18E-03 YBR267W, YCR072C, YDL031W, YDR184C, YDR465C, YGL099W, YGR187C, YMR128W, YOL010W, YOR001W
  35S primary transcript processing 4.81E-04 4.52E-02 YDL031W, YGR090W, YOL010W, YOL021C, YOR001W
50 pseudohyphal growth 9.72E-04 4.57E-02 YBR083W, YJL164C, YKL185W, YOR127W
  N-terminal protein myristoylation 5.58E-04 2.62E-02 YIL009W, YOR317W
54 DNA unwinding during replication 6.79E-04 4.21E-02 YBR202W, YGL201C, YLR274W
  DNA replication initiation 1.69E-04 1.05E-02 YBL035C, YBR202W, YGL201C, YLR274W
  pheromone-dependent signal transduction during conjugation with cellular fusion 2.18E-04 1.35E-02 YHR005C, YJL157C, YNL173C, YOR127W
55 spore wall assembly (sensu Fungi) 7.33E-05 3.66E-03 YDR126W, YDR523C, YOR177C, YOR242C
56 meiotic mismatch repair 3.03E-05 1.48E-03 YDR097C, YNL082W, YOL090W
  mismatch repair 6.19E-04 3.03E-02 YDR097C, YNL082W, YOL090W
  microtubule nucleation 1.13E-04 5.52E-03 YDR356W, YKL042W, YOR373W, YPL124W
57 sulfate assimilation 1.76E-04 9.50E-03 YFR030W, YJR010W, YKR069W
  microtubule nucleation 1.24E-04 6.67E-03 YBL063W, YMR117C, YOR373W, YPL124W
59 DNA replication checkpoint 5.86E-04 3.23E-02 YCL061C, YMR048W