Table 5 Binning summary for Medium Complexity datasets for contigs with at least 10 reads.
From: Binning sequences using very sparse labels within a metagenome
Assembler | Method | Bins | Binned Contigs | Total #Contigs | %of BinContigs | #ofPred NotInAct | wSp | wSn |
|---|---|---|---|---|---|---|---|---|
Arachne | kmer (7 mer) | 1 | 2 | 1372 | 0.15 | 133 | 1.000 | 0.000 |
Arachne | kmer (8 mer) | 0 | 0 | 1372 | 0 | 1241 | - | 0.000 |
Arachne | BLAST distr 1 | 0 | 0 | 1372 | 0 | 0 | - | 0.000 |
Arachne | BLAST distr 2 | 0 | 0 | 1372 | 0 | 1 | - | 0.000 |
Arachne | S-GSOM (CP = 55%) | 5 | 1061 | 1372 | 77.33 | 0 | 0.998 | 0.768 |
Arachne | gen PhyloPythia (p:0.85) | 3 | 562 | 1372 | 40.96 | 0 | 1.000 | 0.409 |
Arachne | ssp PhyloPythia (p:0.85) | 3 | 657 | 1372 | 47.89 | 0 | 1.000 | 0.478 |
Arachne | S-GSOM (CP = 75%) | 5 | 1253 | 1372 | 91.33 | 0 | 0.983 | 0.897 |
Arachne | gen PhyloPythia (p:0.5) | 4 | 1036 | 1372 | 75.51 | 6 | 1.000 | 0.753 |
Arachne | ssp PhyloPythia (p:0.5) | 4 | 1102 | 1372 | 80.32 | 4 | 1.000 | 0.802 |
Phrap | kmer (7 mer) | 1 | 1 | 1980 | 0.05 | 163 | 1.000 | 0.000 |
Phrap | kmer (8 mer) | 2 | 391 | 1980 | 19.75 | 1457 | 1.000 | 0.000 |
Phrap | BLAST distr 1 | 0 | 0 | 1980 | 0 | 2 | - | 0.000 |
Phrap | BLAST distr 2 | 0 | 0 | 1980 | 0 | 3 | - | 0.000 |
Phrap | S-GSOM (CP = 55%) | 8 | 1409 | 1980 | 71.16 | 9 | 0.995 | 0.686 |
Phrap | gen PhyloPythia (p:0.85) | 3 | 799 | 1980 | 40.35 | 1 | 1.000 | 0.404 |
Phrap | ssp PhyloPythia (p:0.85) | 3 | 844 | 1980 | 42.63 | 1 | 1.000 | 0.426 |
Phrap | S-GSOM (CP = 75%) | 8 | 1708 | 1980 | 86.26 | 9 | 0.991 | 0.816 |
Phrap | gen PhyloPythia (p:0.5) | 5 | 1484 | 1980 | 74.95 | 6 | 1.000 | 0.745 |
Phrap | ssp PhyloPythia (p:0.5) | 5 | 1524 | 1980 | 76.97 | 4 | 1.000 | 0.767 |