Table 1 Characteristics of sample alignments.
From: An efficient visualization tool for the analysis of protein mutation matrices
Sequence Set | Reference sequence Characteristics | Derived sequences | Sample set (NCBI access code numbers) |
|---|---|---|---|
Antibody (anti-TPO) | Low affinity antibody, usually a germline sequence | High-affinity germline derivatives directed against a single epitope | Reference sequence: Z22191 Derivatives: AAD09370, AAD29291, AAD29292, AAD29293, P06888 |
Antibody (amyloidogenic vs. non-amyloidogenic) | Germline sequence | Set 1: Amyloid-forming derivatives of the germline sequence | Â |
| Â | Â | Set 2: Non-amyloid-forming, high-affinity derivatives of the germline sequence | Â |
Hemagglutinin H5 | Random hemagglutinin H5 sequence | All other available hemagglutinin H5 sequences | Â |
Olfactory receptors | Sequence that recognizes some functional group X | Sequences that recognize some functional group Y whose characteristics are diametrically opposed to the characteristics of X, or which are not related to the characteristics of X | Reference sequence: NP_001011738.1 (short-chain alcohol-binding OR) Derivatives (long-chain alcohol-binding ORs): NP_064686.1 AAD27596.2 NP_038648.2 NP_667256.1 AAK00590.1 |