Table 2 Direct experimental support for the interactions uncovered
From: A copula method for modeling directional dependence of genes
Interacting genes (locus name) | Our Method | PathwayAssist | Chen's method | Ref. |
|---|---|---|---|---|
HTA2(YBL003C) – HTA1(YDR225W) | O | O | O | 1 |
HTA2(YBL003C) – HHT2(YNL031C) | O | O | O | 1 |
HTA2(YBL003C) – HTB2(YBL002W) | O | O | O | 1 |
HTA2(YBL003C) – HHT1(YBR010W) | O | O | O | 1 |
HTA2(YBL003C) – HHF1(YBR009C) | O | × | × | 1 |
HTA2(YBL003C) – HHF2(YNL030W) | O | × | × | 1 |
HTA2(YBL003C) – HTB1(YDR224C) | O | × | × | 1 |
HTB2(YBL002W) – HTA1(YDR225W) | O | × | × | 1 |
HTB2(YBL002W) – HHT2(YNL031C) | O | × | × | 1 |
HTB2(YBL002W) – HHT1(YBR010W) | O | × | × | 1 |
HTB2(YBL002W) – HHF1(YBR009C) | O | O | O | 1 |
HTB2(YBL002W) – HHF2(YNL030W) | O | × | × | 1 |
HTB2(YBL002W) – HTB1(YDR224C) | O | O | O | N.A. |
HHT2(YNL031C) – HTA1(YDR225W) | O | × | O | N.A. |
HHT2(YNL031C) – HHT1(YBR010W) | O | × | × | 1 |
HHT2(YNL031C) – HHF1(YBR009C) | O | × | × | 2 |
HHT2(YNL031C) – HHF2(YNL030W) | O | O | O | 1 |
HHT2(YNL031C) – HTB1(YDR224C) | O | × | × | 1 |
HHF1(YBR009C) – HTA1(YDR225W) | O | × | × | 1 |
HHF1(YBR009C) – HHT1(YBR010W) | O | O | O | 1 |
HHF1(YBR009C) – HHF2(YNL030W) | O | O | O | 4 |
HHF1(YBR009C) – HTB1(YDR224C) | O | × | × | 1 |
HHF2(YNL030W) – HTA1(YDR225W) | O | O | O | 1 |
HHF2(YNL030W) – HHT1(YBR010W) | O | O | O | 1 |
HHF2(YNL030W) – HTB1(YDR224C) | O | × | O | N.A. |
HTA1(YDR225W) – HHT1(YBR010W) | O | × | × | 1 |
HTA1(YDR225W) – HTB1(YDR224C) | O | O | O | 2,3 |
HHT1(YBR010W) – HTB1(YDR224C) | O | × | × | 1 |