From: Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes
 |  | (A+T)% of | % of candidates in | ||
---|---|---|---|---|---|
N° | Genome | Bacterial genomes* | 300-bp genomic regions | 300-bp genomic regions | 300-bp random sequences |
1 | Deinococcus radiodurans R1 (AE000513) | 32.99 | 34.19 | 0.19 | 0 |
2 | Caulobacter crescentus (AE005673) | 32.77 | 34.40 | 0.05 | 0 |
3 | Ralstonia solanacearum GMI1000 (AL646052) | 34.51 | 34.50 | 0.20 | 0 |
4 | Pseudomonas aeruginosa PA01 (AE004091) | 33.44 | 35.38 | 0.27 | 0 |
5 | Xanthomonas campestris pv. campestris (AE008922) | 34.93 | 35.64 | 0.05 | 0 |
6 | Mycobacterium tuberculosis (AL123456) | 34.39 | 35.69 | 0.18 | 0 |
7 | Xanthomonas axonopodis pv. citri 306 (AE008923) | 35.23 | 36.02 | 0.05 | 0 |
8 | Mesorhizobium loti (NC002678) | 37.25 | 39.09 | 0.13 | 0 |
9 | Sinorhizobium meliloti 1021 (AL591688) | 37.27 | 39.66 | 0.24 | 0 |
10 | Mycobacterium leprae TN (AL450380) | 42.20 | 43.14 | 0.29 | 0 |
11 | Agrobacterium tumefaciens C58 (AE007869) | 45.64 | 43.20 | 0.74 | 0 |
12 | Brucella melitensis 16 M chromosome I (AE008917) | 42.84 | 45.73 | 1.02 | 0 |
13 | Treponema pallidum (AE000520) | 47.22 | 47.01 | 0.37 | 0.3 |
14 | Chlorobium tepidum TLS (AE006470) | 43.47 | 47.50 | 1.50 | 0.31 |
15 | Salmonella typhimurium LT2 (AE006468) | 47.78 | 51.08 | 3.54 | 0.7 |
16 | Neisseria meningitidis serogroup B MC58 (AE002098) | 48.47 | 52.20 | 5.03 | 0.93 |
17 | Escherichia coli O157:H7 (AE005174)** | 49.50 | 52.54 | 4.80 | 1.1 |
18 | Methanobacterium thermoautotrophicum ΔH (AE000666) | 50.46 | 53.11 | 4.26 | 1.23 |
19 | Synechocystis PCC6803 (AB001339) | 52.28 | 53.71 | 2.89 | 1.7 |
20 | Thermotoga maritima (AE000512) | 53.75 | 54.66 | 3.27 | 2.15 |
21 | Vibrio cholerae chromosome I (AE003852) | 52.30 | 54.94 | 3.22 | 2.4 |
22 | Yersinia pestis CO92 (AL590842) | 52.36 | 55.77 | 6.78 | 3.0 |
23 | Aquifex aeolicus (AE000657) | 57.73 | 57.70 | 4.72 | 4.15 |
24 | Bacillus halodurans C-125 (BA000004) | 56.31 | 58.65 | 8.70 | 5.1 |
25 | Bacillus subtilis (AL009126) | 56.48 | 59.30 | 10.28 | 5.8 |
26 | Mycoplasma pneumoniae M129 (U00089) | 59.99 | 61.71 | 5.25 | 9.7 |
27 | Chlamydia muridarum (AE002160) | 59.69 | 61.73 | 9.01 | 9.7 |
28 | Pasteurella multocida PM70 (AE004439) | 59.60 | 62.31 | 11.42 | 10.9 |
29 | Chlamydophila pneumoniae J138 (BA000008) | 59.42 | 62.80 | 14.77 | 12.5 |
30 | Streptococcus pneumoniae (AE005672) | 60.30 | 62.88 | 15.83 | 13.0 |
31 | Streptococcus pyogenes SF370 serotype M1 (AE004092) | 61.49 | 63.99 | 16.87 | 14.3 |
32 | Thermoanaerobacter tengcongensis MB4T (AE008691) | 62.43 | 64.11 | 17.74 | 14.8 |
33 | Listeria innocua Clip11262 (AL592022) | 62.56 | 64.30 | 12.07 | 15.5 |
34 | Haemophilus influenzae Rd (L42023) | 61.85 | 64.45 | 15.61 | 16.0 |
35 | Mycoplasma genitalium G37 (L43967) | 68.31 | 69.50 | 15.99 | 35.0 |
36 | Staphylococcus aureus N315 (BA000018) | 67.16 | 69.71 | 35.25 | 36.1 |
37 | Campylobacter jejuni (AL111168) | 69.45 | 71.36 | 32.07 | 41.8 |
38 | Clostridium acetobutylicum (AE001437) | 69.07 | 71.83 | 45.08 | 44.2 |
39 | Borrelia burgdorferi.(AE000783) | 71.40 | 73.18 | 40.00 | 54.1 |
40 | Rickettsia prowazekii Madrid E (AJ235269) | 71.00 | 73.26 | 50.06 | 55.2 |
41 | Clostridium perfringens 13 (BA000016) | 71.43 | 74.74 | 53.94 | 58.1 |
42 | Ureaplasma urealyticum (AF222894) | 74.50 | 76.05 | 50.85 | 65.35 |
43 | Buchnera aphidicola Sg (AE013218) | 74.67 | 78.36 | 58.05 | 74.5 |