Table 1 Matrix generation criteria.
From: A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Matrix | S | Z | W | r | B |
|---|---|---|---|---|---|
CBM/12-0-0 | 12 | 0 | 0 | - | 6 |
CBM/12-1-0 | 12 | 1 | 0 | - | 22 |
CBM/12-1-1 | 12 | 1 | 1 | - | 24 |
CBM/12-2-0 | 12 | 2 | 0 | - | 24 |
CBM/12-2-1 | 12 | 2 | 1 | - | 25 |
CBM/11-0-0 | 11 | 0 | 0 | - | 49 |
CBM/11-1-0 | 11 | 1 | 0 | - | 116 |
CBM/11-1-1 | 11 | 1 | 1 | - | 141 |
CBM/11-2-0 | 11 | 2 | 0 | - | 141 |
CBM/11-2-1 | 11 | 2 | 1 | - | 147 |
CBM/10-0-0 | 10 | 0 | 0 | - | 245 |
CBM/10-1-0 | 10 | 1 | 0 | - | 498 |
CBM/10-1-1 | 10 | 1 | 1 | - | 591 |
CBM/10-2-0 | 10 | 2 | 0 | - | 597 |
CBM/10-2-1 | 10 | 2 | 1 | - | 662 |
CBM/09-0-0 | 9 | 0 | 0 | - | 873 |
CBM/09-1-0 | 9 | 1 | 0 | - | 1505 |
CBM/09-1-1 | 9 | 1 | 1 | - | 1759 |
CBM/09-2-0 | 9 | 2 | 0 | - | 1784 |
CBM/09-2-1 | 9 | 2 | 1 | - | 1947 |
CCFMAT70 | - | - | - | 0.70 | 137 |
CCFMAT53 | - | - | - | 0.53 | 1196 |
CCFMAT50 | - | - | - | 0.50 | 1508 |