From: Grammar-based distance in progressive multiple sequence alignment
Algorithm | RV11 | RV12 | RV20 | RV30 | RV40 | RV50 |
---|---|---|---|---|---|---|
MUSCLE (fast) | 0.2421 | 0.6349 | 0.2599 | 0.2457 | 0.2614 | 0.2719 |
MAFFT (fast) | 0.2354 | 0.6209 | 0.3094 | 0.2910 | 0.3108 | 0.3087 |
MAFFT v6 (parttree, n = 50) | 0.2461 | 0.6320 | 0.2978 | 0.2987 | 0.3104 | 0.3435 |
MAFFT | 0.2532 | 0.6256 | 0.3168 | 0.3158 | 0.3073 | 0.3303 |
GramAlign | 0.2993 | 0.6701 | 0.2917 | 0.2503 | 0.3292 | 0.3006 |
Kalign | 0.2538 | 0.6749 | 0.2765 | 0.2955 | 0.3253 | 0.3223 |
ClustalW (fast) | 0.2317 | 0.6651 | 0.2680 | 0.2513 | 0.2808 | 0.2752 |
MUSCLE | 0.3217 | 0.6961 | 0.3077 | 0.3087 | 0.3484 | 0.3397 |
ClustalW | 0.2395 | 0.6417 | 0.2602 | 0.2478 | 0.3024 | 0.2658 |
PSAlign | 0.3503 | 0.7384 | 0.3517 | 0.2992 | 0.3951 | 0.3816 |
T-Coffee | 0.2716 | 0.6986 | 0.3257 | 0.3637 | 0.3659 | 0.3974 |