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Table 3 Execution time.

From: Grammar-based distance in progressive multiple sequence alignment

Algorithm

Execution Time (sec)

MUSCLE (fast)

301

MAFFT (fast)

313

MAFFT v6 (parttree, n = 50)

341

MAFFT

564

GramAlign

680

Kalign

1,329

ClustalW (fast)

2,071

MUSCLE

6,129

ClustalW

8,720

PSAlign

152,168

T-Coffee

403,815

  1. Execution time necessary to align all trials in the BAliBASE test suite.