A Java-based tool for the design of classification microarrays

BMC Bioinformatics

Table 1 Classification accuracy of mixed-plasmid data using hierachical clustering with five sample (plasmid) clusters. PA is the prediction accuracy.

	Number of clusters of probes, κ
	2		5		10		20		30		40
Number of top-ranked probes	PA (%)	No. of probes	PA (%)	No. of probes	PA (%)	No. of probes	PA (%)	No. of probes	PA (%)	No. of probes	PA (%)	No. of probes
100	72.09	2	72.09	5	72.09	10	69.77	19	69.77	29	69.77	32
150	86.05	2	93.02	5	95.35	10	95.35	20	95.35	29	95.35	36
200	74.42	2	90.70	5	93.02	10	93.02	20	93.02	30	95.35	35
250	76.74	2	95.35	5	95.35	10	95.35	20	95.35	30	90.70	34
300	46.51	2	88.37	5	93.02	10	93.02	20	93.02	30	90.70	35
350	76.74	2	93.02	5	93.02	10	95.35	20	95.35	30	95.35	33
400	69.77	2	93.02	5	90.70	10	93.02	20	90.70	30	93.02	35

ISSN: 1471-2105