From: A fast structural multiple alignment method for long RNA sequences
SPS:Family | %id | length(nt) | MXSCARNA | Murlet | ProbCons | MAFFT | ClustalW | StrAl | RNAlara |
---|---|---|---|---|---|---|---|---|---|
UnaL2 | 73 | 54 | 92 | 95 | 95 | 91 | 84 | 86 | 87 |
SECIS | 41 | 64 | 70 | 73 | 68 | 44 | 35 | 59 | 53 |
tRNA | 45 | 73 | 87 | 90 | 87 | 76 | 62 | 75 | 91 |
sno_14q_I_II | 64 | 75 | 82 | 92 | 92 | 91 | 80 | 75 | 72 |
SRP_bact | 47 | 93 | 58 | 61 | 61 | 60 | 61 | 48 | 56 |
THI | 55 | 105 | 77 | 83 | 82 | 78 | 58 | 65 | 65 |
S_box | 66 | 107 | 86 | 88 | 88 | 82 | 82 | 77 | 77 |
5S_rRNA | 57 | 116 | 84 | 85 | 85 | 81 | 82 | 79 | 83 |
Retroviral_psi | 92 | 117 | 97 | 97 | 97 | 97 | 96 | 97 | 97 |
RFN | 66 | 140 | 89 | 91 | 90 | 91 | 83 | 80 | 86 |
5_8S_rRNA | 61 | 154 | 85 | 88 | 87 | 84 | 78 | 81 | 75 |
U1 | 59 | 157 | 74 | 77 | 75 | 73 | 71 | 66 | 66 |
Lysine | 49 | 181 | 75 | 77 | 75 | 66 | 60 | 68 | 59 |
U2 | 62 | 182 | 71 | 74 | 73 | 68 | 65 | 67 | 69 |
T-box | 45 | 244 | 44 | 50 | 50 | 43 | 34 | 32 | 15 |
IRES_HCV | 94 | 261 | 96 | 96 | 96 | 96 | 96 | 83 | 96 |
SRP_euk_arch | 40 | 291 | 42 | 42 | 40 | 36 | 34 | 40 | 39 |
Average(all) | Â | Â | 77 | 80 | 79 | 74 | 68 | 69 | 70 |
Average(sub) | Â | Â | 82 | 86 | 85 | 80 | 73 | 75 | 77 |
SPS:Family | RNASampler | Locarna | FoldalignM(1) | FoldalignM(2) | MARNA | PMmulti | Stemloc | Â | Â |
UnaL2 | 72 | 88 | 68 | 60 | 83 (5/5) | 69 (5/5) | 82 (5/5) | Â | Â |
SECIS | 54 | 49 | 42 | 41 | 47 (5/5) | 35 (5/5) | 82 (5/5) | Â | Â |
tRNA | 82 | 79 | 84 | 66 | 54 (5/5) | 69 (5/5) | 91 (5/5) | Â | Â |
sno_14q_I_II | 64 | 57 | 45 | 34 | 49 (5/5) | 39 (3/5) | 77 (5/5) | Â | Â |
SRP_bact | 54 | 52 | 55 | 51 | 43 (5/5) | 36 (4/5) | 47 (3/5) | Â | Â |
THI | 68 | 65 | 65 | 62 | 62 (4/5) | 58 (5/5) | 71 (5/5) | Â | Â |
S_box | 76 | 63 | 57 | 57 | 78 (5/5) | 44 (5/5) | 84 (5/5) | Â | Â |
5S_rRNA | 77 | 79 | 74 | 70 | 71 (5/5) | 57 (5/5) | 77 (3/5) | Â | Â |
Retroviral_psi | 96 | 95 | 91 | 91 | 96 (5/5) | 87 (5/5) | 75 (5/5) | Â | Â |
RFN | 82 | 72 | 73 | 63 | 77 (5/5) | 58 (4/5) | 80 (5/5) | Â | Â |
5_8S_rRNA | 69 | 75 | 56 | 31 | 64 (5/5) | 58 (5/5) | 73 (1/5) | Â | Â |
U1 | 63 | 68 | Â | Â | 50 (5/5) | Â | Â | Â | Â |
Lysine | 71 | 55 | Â | Â | 58 (5/5) | Â | Â | Â | Â |
U2 | 65 | 64 | Â | Â | 65 (1/5) | Â | Â | Â | Â |
T-box | 32 | 15 | Â | Â | 22 (5/5) | Â | Â | Â | Â |
IRES_HCV | 93 | 75 | Â | Â | 92 (3/5) | Â | Â | Â | Â |
SRP_euk_arch | 33 | 40 | Â | Â | 37 (5/5) | Â | Â | Â | Â |
Average(all) | 68 | 64 | Â | Â | 62 | Â | Â | Â | Â |
Average(sub) | 72 | 70 | 64 | 57 | 52 | 60 | 76 | Â | Â |
MCC:Family | %id | length(nt) | MXSCARNA | Murlet | ProbCons | MAFFT | ClustalW | StrAl | RNAlara |
UnaL2 | 73 | 54 | 42 | 41 | 46 | 36 | 24 | 32 | 44 |
SECIS | 41 | 64 | 78 | 78 | 59 | 20 | 23 | 45 | 70 |
tRNA | 45 | 73 | 93 | 97 | 91 | 85 | 65 | 85 | 97 |
sno_14q_I_II | 64 | 75 | 87 | 91 | 91 | 91 | 66 | 75 | 87 |
SRP_bact | 47 | 93 | 66 | 56 | 46 | 49 | 54 | 52 | 69 |
THI | 55 | 105 | 71 | 70 | 70 | 62 | 38 | 48 | 58 |
S_box | 66 | 107 | 90 | 89 | 87 | 79 | 77 | 75 | 76 |
5S_rRNA | 57 | 116 | 75 | 67 | 62 | 64 | 53 | 66 | 69 |
Retroviral_psi | 92 | 117 | 86 | 86 | 86 | 84 | 86 | 86 | 86 |
RFN | 66 | 140 | 67 | 71 | 72 | 73 | 71 | 60 | 70 |
5_8S_rRNA | 61 | 154 | 38 | 43 | 35 | 16 | 14 | 26 | 33 |
U1 | 59 | 157 | 69 | 61 | 57 | 56 | 61 | 52 | 56 |
Lysine | 49 | 181 | 83 | 81 | 71 | 33 | 52 | 61 | 64 |
U2 | 62 | 182 | 74 | 71 | 56 | 38 | 39 | 58 | 68 |
T-box | 45 | 244 | 72 | 78 | 80 | 51 | 41 | 26 | 0 |
IRES_HCV | 94 | 261 | 63 | 62 | 62 | 63 | 26 | 34 | 63 |
SRP_euk_arch | 40 | 291 | 70 | 63 | 40 | 21 | 23 | 38 | 33 |
Average(all) | Â | Â | 72 | 71 | 65 | 54 | 48 | 54 | 61 |
Average(sub) | Â | Â | 72 | 72 | 68 | 60 | 52 | 59 | 69 |
MCC:Family | RNASampler | Locarna | FoldalignM(1) | FoldalignM(2) | MARNA | PMmulti | Stemloc | Â | Â |
UnaL2 | 51 | 42 | 57 | 50 | 36 | 18 | 39 | Â | Â |
SECIS | 78 | 80 | 75 | 80 | 40 | 64 | 77 | Â | Â |
tRNA | 94 | 96 | 95 | 89 | 51 | 91 | 98 | Â | Â |
sno_14q_I_II | 84 | 95 | 95 | 86 | 79 | 77 | 87 | Â | Â |
SRP_bact | 73 | 74 | 80 | 75 | 47 | 44 | 64 | Â | Â |
THI | 72 | 60 | 50 | 51 | 59 | 41 | 77 | Â | Â |
S_box | 86 | 82 | 83 | 87 | 83 | 55 | 88 | Â | Â |
5S_rRNA | 62 | 75 | 72 | 73 | 59 | 58 | 66 | Â | Â |
Retroviral_psi | 86 | 88 | 76 | 89 | 84 | 73 | 87 | Â | Â |
RFN | 69 | 69 | 67 | 70 | 65 | 58 | 72 | Â | Â |
5_8S_rRNA | 38 | 40 | 43 | 41 | 21 | 14 | 34 | Â | Â |
U1 | 64 | 73 | Â | Â | 45 | Â | Â | Â | Â |
Lysine | 86 | 80 | Â | Â | 66 | Â | Â | Â | Â |
U2 | 79 | 65 | Â | Â | 66 | Â | Â | Â | Â |
T-box | 44 | 1 | Â | Â | 2 | Â | Â | Â | Â |
IRES_HCV | 63 | 47 | Â | Â | 61 | Â | Â | Â | Â |
SRP_euk_arch | 62 | 64 | Â | Â | 52 | Â | Â | Â | Â |
Average(all) | 70 | 66 | Â | Â | 54 | Â | Â | Â | Â |
Average(sub) | 72 | 73 | 72 | 72 | 60 | 54 | 72 | Â | Â |