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Table 2 Haplotype estimation frequency error

From: NullHap – a versatile application to estimate haplotype frequencies from unphased genotypes in the presence of null alleles

No example description error
   Arlequin PHASE Haplo-IHP NullHap
1 biallelic loci: A(A1, A2), B(B1, B2), C(C1, C2) no null variants 0% 0% 0% 0%
2 biallelic loci: A(A0, A1), B(B0,B1), C(C0, C1), null variants: A0, B0 and C0 61% 50% 1% 0%
3 multiallelic loci: A(A1, A2, A3), B(B1, B2, B3), no null variants 0% 1% 78% 0%
4 multiallelic loci: A(A0, A1, A2), B(B0,B1, B2), null variants: A0 and B0 62% 62% 100% 0%
5 multiallelic and biallelic loci with null variants: A(A0,A1,A2), B(B0,B1), C(C0,C1) 62% 48% 64% 0%
6 details in Table 2, A(A0,A1,A2), B(B1,B2,B3,B4), C(C0,C1) 79% 79% 82% 0%
  1. Haplotype estimation frequency error for six polymorphisms with varying locus characteristics.
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