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Table 5 Significant pairs in chromosome data

From: Determining significance of pairwise co-occurrences of events in bursty sequences

chr TF 1 TF 2 # TF 1 # TF 2 C num FL ref
1 MA0042, FOXI1 MA0045, HMG-IY 1656 3958 550 10 Y  
1 MA0041, Foxd3 MA0045, HMG-IY 1643 3958 547 10 Y  
9 MA0045, HMG-IY MA0119, TLX1-NFIC 3771 985 458 7 Y  
2 MA0073, RREB1 MA0079, SP1 1968 447 317 6 Y [16]
1 MA0045, HMG-IY MA0088, Staf 3958 583 180 4 Y  
9 MA0045, HMG-IY MA0137, STAT1 3771 642 173 3 Y  
4 MA0045, HMG-IY MA0079, SP1 2661 744 170 2 Y [17]
9 MA0042, FOXI1 MA0119, TLX1-NFIC 1439 985 170 4 Y  
6 MA0045, HMG-IY MA0082, SQUA 4029 579 164 2 N  
9 MA0003, TFAP2A MA0073, RREB1 856 1756 131 4 Y [18]
1 MA0029, Evi1 MA0045, HMG-IY 856 1756 131 4 Y  
4 MA0045, HMG-IY MA0112, ESR1 465 3958 129 2 Y [19]
9 MA0041, Foxd3 MA0119, TLX1-NFIC 2661 605 121 1 N  
9 MA0022, dl_1 MA0045, HMG-IY 1162 985 118 4 Y  
1 MA0045, HMG-IY MA0049, hb 365 3771 110 4 Y  
9 MA0003, TFAP2A MA0123, ABI4 3958 387 110 1 N  
4 MA0073, RREB1 MA0123, ABI4 856 355 107 10 Y  
4 MA0045, HMG-IY MA0048, NHLH1 1971 303 103 4 Y  
4 MA0079, SP1 MA0119, TLX1-NFIC 744 1013 102 1 Y  
6 MA0073, RREB1 MA0138, REST 1868 615 100 1 Y  
  1. The significant pairs (p ≤ 0.001) in chromosome data with the highest C scores. The parameters used are w = 300 bp, minimum distance d = 20 bp, and significance is determined according to the FL(r) null model for the C score. There are in total 241 unique significant pairs in chromosomes 1–10 with these parameters. The chromosome where the C score is highest, and the total number of times that each TF occurs in the corresponding chromosome are given, as well as the C score. The following two columns state the number of chromosomes (1–10) in which the pair is significant, and if the pair is significant according to the FL null model. The last column gives a reference when one exists. Additional file 2 contains the full names of the factors.