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Table 4 Summary of most abundant merged and non-merged OPFs from the AMD, soil, and whalebone communities.

From: A statistical toolbox for metagenomics: assessing functional diversity in microbial communities

Number of ORFs in OPF Putative annotation Representative GenBank Accession
AMD Soil Whale   
Merged OPFs
562 350 451 Acetate CoA ligase ZP_01856978
1628 1515 1240 Diguanylate cyclase signal protein YP_001112705
796 1226 1086 ABC transporter ZP_01060315
371 163 138 Resistance protein ZP_01908921
216 121 152 Dehydrogenase ZP_01454599
238 237 236 Cation transporting ATPase ZP_01060472
237 170 269 Dehydrogenase ZP_01105894
476 282 318 Translocation elongation factor ZP_01594411
123 125 156 DNA helicase ZP_01189997
169 184 289 Acyl CoA dehyodrogenase ZP_01512967
Non-merged OPFs
22 7 5 Urocanate hydratase ZP_01709366
18 5 13 DNA gyrase, A subunit ZP_01052578
17 9 12 Nucleoside-diphosphate kinase ZP_01106957
11 13 14 Nitrogen regulatory protein PII NP_767252
10 10 10 50S ribosomal protein, L19 YP_471434
9 12 9 GTP-binding protein LepA ZP_01650030
7 11 14 50S ribosomal protein, L20 ZP_01108363
8 10 9 Excinuclease ATPase subunit YP_861824
6 10 11 GMP synthase ZP_01753395
5 13 10 30S ribosomal protein, S13 ZP_01885769