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Figure 3 | BMC Bioinformatics

Figure 3

From: Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments

Figure 3

Comparison of query accuracy, on the evaluation set, with p-values calibrated against the GEO corpus using Pearson correlation. Queries based upon signed p-value were more effective than just p-value. Cyber-T was also extremely effective especially for N > 60. Using log fold changes as gene values was least effective consistently, perhaps due to the noise in the log fold change for genes with low expression.

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