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Table 3 Summary of the within-cluster Euclidean distance and the center-to-center Euclidean distance for 18 protein fragment clusters found by our alphabet design pipeline

From: Protein structure search and local structure characterization

  Within-Cluster Center-to-Center
  Mean SD 18 17 16 15 14 13 12 11 10 9 8 7 6 5 4 3 2 1
1 116.6 37.2 252.3 300.4 330.1 242.8 181.7 182.1 317.6 327.7 415.4 266.3 329.0 181.7 242.5 262.2 273.6 253.4 193.2 0
2 238.7 38.5 315.8 226.6 272.7 197.4 243.3 227.2 285.3 270.5 346.1 283.9 285.4 261.3 189.5 182.3 215.0 296.0 0  
3 264.7 29.8 219.7 279.8 193.6 220.6 190.4 284.1 251.1 292.9 413.2 195.1 237.6 181.4 324.4 234.1 285.9 0   
4 319.3 41.5 297.8 297.0 270.7 285.5 311.5 288.6 286.9 317.1 352.2 302.9 184.3 250.7 256.2 193.3 0    
5 250.4 39.7 248.6 268.9 190.2 238.1 302.2 280.1 258.5 287.2 406.6 267.2 258.8 192.8 229.0 0     
6 257.5 28.0 220.4 174.2 242.3 180.4 262.8 266.2 264.4 229.1 310.3 322.3 270.9 308.6 0      
7 72.2 20.4 220.8 356.7 289.2 297.5 266.1 244.8 307.2 361.1 478.3 248.9 316.8 0       
8 282.2 31.0 275.3 214.2 186.1 218.9 259.1 335.6 258.2 253.8 286.9 273.9 0        
9 320.9 27.9 275.8 287.6 250.7 244.5 222.6 292.2 286.7 307.3 354.3 0         
10 148.8 26.1 406.3 243.1 334.4 286.3 333.5 361.8 293.2 240.8 0          
11 97.1 43.4 290.4 169.5 214.8 178.9 248.7 238.3 270.4 0           
12 272.0 32.7 259.7 226.6 200.7 218.7 269.1 325.6 0            
13 133.6 33.2 291.2 309.3 334.3 267.6 230.5 0             
14 272.8 31.4 255.5 206.2 258.7 145.3 0              
15 106.2 32.3 241.1 76.8 162.1 0               
16 109.0 39.1 221.8 172.6 0                
17 33.2 23.2 272.9 0                 
18 146.2 38.2 0