Table 9 Results of ten difficult cases of pairwise alignment
From: Protein structure search and local structure characterization
Protein 1 | Protein 2 | VAST | DALI | CE | FATCAT | Yang & Tung's | de Brevern et al.'s | Our SA |
|---|---|---|---|---|---|---|---|---|
1fxia | 1ubq | 48(2.10) | 60(2.60) | 64(3.80) | 63(3.01) | 59(2.76) | 76(2.89) | 58(2.64) |
1ten | 3hhrb | 78(1.60) | 86(1.90) | 87(1.90) | 87(1.90) | 57(2.57) | 73(2.31) | 90(2.24) |
3hlab | 2rhe_ | - | 63(2.50) | 85(3.50) | 79(2.81) | 54(2.65) | 78(3.01) | 79(2.87) |
2azaa | 1paz_ | 74(2.20) | 81(2.50) | 85(2.90) | 87(3.01) | 70(2.34) | 57(2.23) | 87(2.40) |
1cewi | 1mola | 71(1.9) | 81(2.30) | 69(1.90) | 83(2.44) | 52(2.37) | 53(2.35) | 61(1.83) |
1cid_ | 2rhe_ | 85(2.20) | 95(3.30) | 94(2.70) | 100(3.11) | 54(2.75) | 53(2.49) | 55(2.08) |
1crl_ | 1ede | - | 211(3.40) | 187(3.20) | 269(3.55) | 167(3.35) | 120(3.47) | 187(3.25) |
2sim_ | 1nsba | 284(3.80) | 286(3.80) | 264(3.00) | 286(3.07) | 121(2.75) | 121(2.96) | 137(3.2) |
1bgea | 2gmfa | 74(2.50) | 98(3.50) | 94(4.10) | 100(3.19) | 27(3.34) | 77(2.8) | 78(2.72) |
1tie_ | 4fgf_ | 82(1.70) | 108(2.00) | 116(2.90) | 117(3.05) | 91(3.15) | 62(3.45) | 115(3.05) |
Average RMSD/aligned-residues | Â | 0.0226 | 0.0238 | 0.0261 | 0.0229 | 0.0373 | 0.0363 | 0.0278 |