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Table 1 Comparison of the top 7 cytogenetic bands related to gender detected by different methods.

From: Testing gene set enrichment for subset of genes: Sub-GSE

Sub-GSE

GSEA

sigPath

set names

q-value

set names

FDR

set names

max q-value

chrY

0

chrY

0

chrY

0

chrYq11

0

chrYq11

0.000801147

chrYq11

0

chrYp11

0

chrYp11

0.000811309

chrYp11

0

chrXp22

0.147

chrYp11_Xp22

0.25508726

chrYp11_Xp22

0.315700257

chrX

0.294

chr11p12

0.31999215

chr1q22

0.990782566

chrXp11

0.686

chr6q24

0.6108403

chr20p11

0.991916264

chr15q11

0.924

chr5p14

0.6131663

chr15q21

0.991916264

  1. The top 7 gene sets by Sub-GSE, GSEA and sigPath and their corresponding p-values, FDR and max q-values. The cytogenetic bands chrYp11_Xp22 was named chrYp22 in the original gene set data which include 8 genes that are on both chrYp11 and chrXp22.