Skip to main content

Table 3 Experimental results TMPDB.

From: IgTM: An algorithm to predict transmembrane domains and topology in proteins

  

TMPDB

  

Sn

Sp

CC

AC

Sov 3 obs

100%

≥ 90%

≥ 75%

igTM

exp5

0.683

0.750

0.587

0.539

0.519

0.444

0.515

0.608

 

exp6

0.710

0.759

0.617

0.557

0.533

0.487

0.562

0.652

TMHMM 2.0

0.739

0.831

0.717

0.659

0.745

0.259

0.465

0.671

Pred-TMR

0.777

0.899

0.785

0.756

0.831

0.209

0.426

0.736

Prodiv-TMHMM

0.737

0.829

0.709

0.659

0.756

0.208

0.427

0.647

HMMTOP

0.769

0.802

0.686

0.861

0.670

0.189

0.381

0.651

PHOBIUS

0.775

0.786

0.686

0.670

0.811

0.258

0.452

0.693

MEMSAT 3

0.775

0.793

0.668

0.671

0.783

0.278

0.487

0.692

TMpred

0.702

0.755

0.615

0.598

0.746

0.222

0.361

0.572

  1. Experimental results and comparison with results of other methods, with the TMPDB α-helix database. As discussed in the Performance Measures section, 100%, ≥ 90% and ≥ 75% stand for segments correctly detected in that percentage.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us