Table 1 A summary of SQUAT possibilities.
From: SQUAT: A web tool to mine human, murine and avian SAGE data
You have ... | You search for... | Way to go |
|---|---|---|
gene name | corresponding tags | Tag/Gene identification -> Gene information search |
NCBI description | Tag/Gene identification -> Gene information search | |
aliases | Tag/Gene identification -> Gene information search | |
Gene Ontology data | Tag/Gene identification -> Gene information search | |
transcript | Tag/Gene identification -> Gene information search | |
promoter | Tag/Gene identification -> Gene information search | |
SAGE libraries | Queries on raw SAGE data -> SAGE libraries search | |
formal concepts/QSG | Queries on formal concepts -> Simple concepts search | |
tag sequence | corresponding tags | Tag/Gene identification -> Tag-to-gene assignment |
NCBI description | Tag/Gene identification -> Tag-to-gene assignment | |
transcript | Tag/Gene identification -> Tag-to-gene assignment | |
promoter | Tag/Gene identification -> Tag-to-gene assignment | |
Gene Ontology data | Tag/Gene identification -> Tag-to-gene assignment | |
SAGE libraries | Tag/Gene identification -> Tag-to-gene assignment | |
Queries on raw SAGE data -> SAGE libraries search | ||
formal concepts/QSG | Queries on formal concepts -> Simple concepts search | |
expression sub-matrix | Queries on raw SAGE data -> Expression sub-matrix | |
expression in normal and cancer cells | Queries on raw SAGE data -> Expression sub-matrix | |
Gene Ontology term | corresponding tags | Queries on raw SAGE data -> Gene Ontology search |
corresponding genes | Queries on raw SAGE data -> Gene Ontology search | |
description | Queries on raw SAGE data -> Gene Ontology search | |
SAGE library | Queries on raw SAGE data -> Gene Ontology search | |
formal concepts/QSG | Queries on formal concepts -> Advanced concepts search | |
SAGE library | corresponding tags | Queries on raw SAGE data -> Tags search |
SAGEmap description | ||
formal concepts/QSG | Queries on formal concepts -> Advanced concepts search | |
expression sub-matrix | Queries on raw SAGE data -> Expression sub-matrix | |
nucleotide sequence | reverse sequence | Tag/Gene identification -> Nucleotids sequence handling |
complementary sequence | ||
global keywords | corresponding tags | Tag/Gene identification -> Gene product finder |
NCBI description | ||
Gene Ontology ID/term | Queries on formal concepts -> Advanced concepts search | |
accession number (RefSeq) or gene description | promoter | Promoter search |