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Table 1 A summary of SQUAT possibilities.

From: SQUAT: A web tool to mine human, murine and avian SAGE data

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gene name corresponding tags Tag/Gene identification -> Gene information search
  NCBI description Tag/Gene identification -> Gene information search
  aliases Tag/Gene identification -> Gene information search
  Gene Ontology data Tag/Gene identification -> Gene information search
  transcript Tag/Gene identification -> Gene information search
  promoter Tag/Gene identification -> Gene information search
  SAGE libraries Queries on raw SAGE data -> SAGE libraries search
  formal concepts/QSG Queries on formal concepts -> Simple concepts search
tag sequence corresponding tags Tag/Gene identification -> Tag-to-gene assignment
  NCBI description Tag/Gene identification -> Tag-to-gene assignment
  transcript Tag/Gene identification -> Tag-to-gene assignment
  promoter Tag/Gene identification -> Tag-to-gene assignment
  Gene Ontology data Tag/Gene identification -> Tag-to-gene assignment
  SAGE libraries Tag/Gene identification -> Tag-to-gene assignment
   Queries on raw SAGE data -> SAGE libraries search
  formal concepts/QSG Queries on formal concepts -> Simple concepts search
  expression sub-matrix Queries on raw SAGE data -> Expression sub-matrix
  expression in normal and cancer cells Queries on raw SAGE data -> Expression sub-matrix
Gene Ontology term corresponding tags Queries on raw SAGE data -> Gene Ontology search
  corresponding genes Queries on raw SAGE data -> Gene Ontology search
  description Queries on raw SAGE data -> Gene Ontology search
  SAGE library Queries on raw SAGE data -> Gene Ontology search
  formal concepts/QSG Queries on formal concepts -> Advanced concepts search
SAGE library corresponding tags Queries on raw SAGE data -> Tags search
  SAGEmap description  
  formal concepts/QSG Queries on formal concepts -> Advanced concepts search
  expression sub-matrix Queries on raw SAGE data -> Expression sub-matrix
nucleotide sequence reverse sequence Tag/Gene identification -> Nucleotids sequence handling
  complementary sequence  
global keywords corresponding tags Tag/Gene identification -> Gene product finder
  NCBI description  
  Gene Ontology ID/term Queries on formal concepts -> Advanced concepts search
accession number (RefSeq) or gene description promoter Promoter search