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Figure 6 | BMC Bioinformatics

Figure 6

From: "TOF2H": A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis

Figure 6

Screen capture of TOF2H-Rates Browser. "Navigation" frame: Input "Rates" files data. "Peptide lists" frame, "Group tab" frame: Peptide picking (multi-tabbed by input file or file-group). "Hotness" frame: Suggested color for 3D visualization. "Displayed peptide" frame: Peptide info (red dots = theoretically exchangeable protons based on primary structure considerations only; blue "v" = hydrogen bonded amide protons predicted from crystal structure). Central charts and "Calculation" frame: Rate plot display, manipulation, and send to output chart. "SASA" frame: Main chain amide proton predicted solvent exposure as calculated by SASA [12].

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BMC Bioinformatics

ISSN: 1471-2105

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