Sequence based residue depth prediction using evolutionary information and predicted secondary structure

BMC Bioinformatics

Table 11 Summary of the selected features, with exception of the PSSM features.

Rank^a	Feature	PCC	Rank	Feature	PCC	Rank	Feature	PCC
5	SSP_C⁰	0.292	9	SSP_E⁰	0.279	18	PS	0.225
11	SSP_C^-1	0.257	12	SSP_E^-1	0.254	34	IPP⁰	0.120
14	SSP_C⁺¹	0.251	17	SSP_E⁺¹	0.231	124	IPP⁺⁴	0.056
20	SSP_C^-2	0.178	22	SSP_E^-2	0.170
21	SSP_C⁺²	0.175	26	SSP_E⁺²	0.144	80	Position	0.079
60	SSP_C^-7	0.095	53	SSP_E⁺⁶	0.098
68	SSP_C^-6	0.086	63	SSP_E⁺⁷	0.089
74	SSP_C⁺⁷	0.081	70	SSP_E⁺⁵	0.085
78	SSP_C^-5	0.080	86	SSP_E^-3	0.077
83	SSP_C^-3	0.079	108	SSP_E^-6	0.061
84	SSP_C⁺⁶	0.079	112	SSP_E^-7	0.059
96	SSP_C⁺³	0.069
110	SSP_C⁺⁵	0.061	62	fseg_C	0.089

^a the rank of a given feature among the selected 125 features; this excludes the features based on PSSM.

ISSN: 1471-2105