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Table 3 Results of evaluation for alternative mappings.

From: SSMap: A new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase

Reference source

SSMap

  

Compared source

SIFTS

PDBSWS

DR PDB

Correct in SSMap

67 (67%)

29 (58%)

33 (66%)

Error in SSMap

17 (17%)

8 (16%)

10 (20%)

Ambiguous

16 (16%)

13 (26%)

7 (14%)

  1. Random chosen sets of alternative mappings from each comparison pairs (100 SSMap vs SIFTS, 50 SSMap vs PDBSWS, 50 SSMaps vs DR PDB) were evaluated manually.
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BMC Bioinformatics

ISSN: 1471-2105

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