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Table 3 Performance for the prediction of the ω-site

From: PredGPI: a GPI-anchor predictor

Predictor

BigPI

DGPI

GPI-SOM

PredGPI (cv*)

PredGPI (non cv**)

Correctly predicted proteins

23

16

15

21

24

Proteins wrongly predicted by one position

1

4

2

3

2

Proteins wrongly predicted by more than one position

1

5

7

2

0

Proteins predicted as non GPI-anchored

1

1

2

0

0

  1. The test set comprises 26 sequences with experimentally annotated ω-site (GPIω-Set). The number of sequences is listed.
  2. *cv = results obtained with a 20-fold cross validation prediction;
  3. **non cv = results obtained with a predictor trained on all the 26 sequences.
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BMC Bioinformatics

ISSN: 1471-2105

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