Skip to main content

Table 4 Comparison of the number of known complexes matched by the predicted clusters (consisting of 3 or more proteins) generated by IPCA and DPClus.

From: Modifying the DPClus algorithm for identifying protein complexes based on new topological structures

Overlapping Score(OS) IPCA(T in = 0.9;SP ≤ 2) DPClus(Ov;CP in = 0.5;D in = 0.9)
OS ≥ 0.1 134 (202) 116 (191)
OS ≥ 0.2 103 (165) 78 (128)
OS ≥ 0.3 87 (116) 63 (85)
OS ≥ 0.4 75 (104) 54 (74)
OS ≥ 0.5 56 (83) 35 (52)
OS ≥ 0.6 45 (67) 28 (41)
OS ≥ 0.7 27 (42) 15 (25)
OS ≥ 0.8 21 (36) 10 (20)
OS ≥ 0.9 14 (29) 5 (15)
OS = 1.0 13 (28) 5 (15)
  1. The number of known complexes matched by the predicted clusters (consisting of 2 or more proteins) is shown in brackets.