Table 1 Molecular interaction data sources incorporated by iRefIndex.
From: iRefIndex: A consolidated protein interaction database with provenance
Source | Format | Location | Version (date) |
|---|---|---|---|
BIND | Tab-delimited text file. | ftp://ftp.bind.ca/pub/BIND/data/bindflatfiles/bindindex/(see Methods). 20050525.complex2refs.txt 20050525.ints.txt 20050525.refs.txt 20050525.complexes.txt 20050525.labels.txt 20050525.complex2subunits.txt | May 25, 2005. |
BioGRID | PSI-MI 2.5 | http://www.thebiogrid.org/downloads.php BIOGRID-ORGANISM-2.0.38.psi25.zip | Version 2.0.38 |
DIP | PSI-MI 2.5 | http://dip.doe-mbi.ucla.edu/dip/Download.cgi dip20080114.mif25.gz | Jan. 14, 2008 |
HPRD | PSI-MI 2.5 | HPRD_SINGLE_PSIMI_090107.xml.tar.gz | Release 7. Sept. 1, 2007 |
IntAct | PSI-MI 2.5 | ftp://ftp.ebi.ac.uk/pub/databases/intact/2008-03-14/psi25/ pmidMIF25.zip | Mar. 15, 2008 |
MINT | PSI-MI 2.5 | ftp://mint.bio.uniroma2.it/pub/release/psi/2007-12-21/psi25/ full.psi25.zip | Dec 21, 2007 |
MPact | PSI-MI 2.5 | ftp://ftpmips.gsf.de/yeast/PPI/ mpact-complete.psi25.xml | April 19, 2007 |
MPPI | PSI-MI 1.0 | Not available | |
OPHID | PSI-MI 1.0 | July 18, 2006 |