Table 1 Molecular interaction data sources incorporated by iRefIndex.
From: iRefIndex: A consolidated protein interaction database with provenance
| Source | Format | Location | Version (date) |
|---|---|---|---|
| BIND | Tab-delimited text file. |
ftp://ftp.bind.ca/pub/BIND/data/bindflatfiles/bindindex/(see Methods). 20050525.complex2refs.txt 20050525.ints.txt 20050525.refs.txt 20050525.complexes.txt 20050525.labels.txt 20050525.complex2subunits.txt | May 25, 2005. |
| BioGRID | PSI-MI 2.5 |
http://www.thebiogrid.org/downloads.php
BIOGRID-ORGANISM-2.0.38.psi25.zip | Version 2.0.38 |
| DIP | PSI-MI 2.5 |
http://dip.doe-mbi.ucla.edu/dip/Download.cgi
dip20080114.mif25.gz | Jan. 14, 2008 |
| HPRD | PSI-MI 2.5 |
http://www.hprd.org/download/
HPRD_SINGLE_PSIMI_090107.xml.tar.gz |
Release 7. Sept. 1, 2007 |
| IntAct | PSI-MI 2.5 |
ftp://ftp.ebi.ac.uk/pub/databases/intact/2008-03-14/psi25/
pmidMIF25.zip | Mar. 15, 2008 |
| MINT | PSI-MI 2.5 |
ftp://mint.bio.uniroma2.it/pub/release/psi/2007-12-21/psi25/
full.psi25.zip | Dec 21, 2007 |
| MPact | PSI-MI 2.5 |
ftp://ftpmips.gsf.de/yeast/PPI/
mpact-complete.psi25.xml | April 19, 2007 |
| MPPI | PSI-MI 1.0 | http://mips.gsf.de/proj/ppi/data/mppi.gz | Not available |
| OPHID | PSI-MI 1.0 | http://ophid.utoronto.ca/ophid/downloads.html | July 18, 2006 |
