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Table 1 Molecular interaction data sources incorporated by iRefIndex.

From: iRefIndex: A consolidated protein interaction database with provenance

Source Format Location Version (date)
BIND Tab-delimited text file. ftp://ftp.bind.ca/pub/BIND/data/bindflatfiles/bindindex/(see Methods).
20050525.complex2refs.txt
20050525.ints.txt
20050525.refs.txt
20050525.complexes.txt
20050525.labels.txt
20050525.complex2subunits.txt
May 25, 2005.
BioGRID PSI-MI 2.5 http://www.thebiogrid.org/downloads.php
BIOGRID-ORGANISM-2.0.38.psi25.zip
Version 2.0.38
DIP PSI-MI 2.5 http://dip.doe-mbi.ucla.edu/dip/Download.cgi
dip20080114.mif25.gz
Jan. 14, 2008
HPRD PSI-MI 2.5 http://www.hprd.org/download/
HPRD_SINGLE_PSIMI_090107.xml.tar.gz
Release 7.
Sept. 1, 2007
IntAct PSI-MI 2.5 ftp://ftp.ebi.ac.uk/pub/databases/intact/2008-03-14/psi25/
pmidMIF25.zip
Mar. 15, 2008
MINT PSI-MI 2.5 ftp://mint.bio.uniroma2.it/pub/release/psi/2007-12-21/psi25/
full.psi25.zip
Dec 21, 2007
MPact PSI-MI 2.5 ftp://ftpmips.gsf.de/yeast/PPI/
mpact-complete.psi25.xml
April 19, 2007
MPPI PSI-MI 1.0 http://mips.gsf.de/proj/ppi/data/mppi.gz Not available
OPHID PSI-MI 1.0 http://ophid.utoronto.ca/ophid/downloads.html July 18, 2006