Figure 5

(A) Consensus calling using multiple algorithms. Multiple algorithms (and different parameters) can be selected to analyze a given array CGH sample and this can be defined for each array platform independently as each platform may have exhibit different noise and ratio response characteristics. (B) Heterogeneous array analysis using data from multiple array CGH platforms. Sample from the Agilent 244K, Affymetrix SNP 500K and whole genome BAC array were segmented to define areas of gain and loss. Subsequently, the results were aggregated into a frequency histogram plot showing the common areas of gain and loss across the three samples.