Figure 2
From: Reranking candidate gene models with cross-species comparison for improved gene prediction
Performance by rank on Drosophila melanogaster. The table on the bottom right shows the number of loci where ReRanker-5g selects Evigan-5g candidate gene models of certain rank. For example, there are 6031 loci where ReRanker selects the most probable candidate models as defined by Evigan; there are 820 loci where ReRanker-5g selects the second to the fifth most probable candidate models as defined by Evigan, and so on. The other panels show the F-score (harmonic mean of sensitivity and specificity) of Evigan-5g and ReRanker-5g at the exon, transcript and gene levels for various rank ranges. ReRanker is successful at improving the identification of correct gene models even when selected candidates are far from the top of the list provided by Evigan.