Figure 5
From: Prediction of TF target sites based on atomistic models of protein-DNA complexes
Stacked sequence logos for comparative models of FNR and Giant. A: cumulative contact logo. B: readout logo. C: logo derived from cognate sites reported in the literature. D: multiple sequence alignment of DNA-binding interface of homologous sequences for the modeled sequences and the templates used in modeling. Residues marked with asterisks participate in specific DNA recognition. See Table 4 for more details.