Skip to main content

Table 2 Significant sets, Jaccard similarity

From: Assessment of protein set coherence using functional annotations

Dataset

Sets

 

p-value < 0.05

p-value < 0.001

GOcc

503

pv1

460 (-10, -1.99%)

425 (-9, -1.79%)

  

pv2

440 (-9, -1.79%)

384 (-8, -1.59%)

  

pv3

381 (-19, -3.78%)

320 (-18, -3.58%)

MIPS-curated

217

pv1

214 (-1, -0.46%)

201 (-3, -1.38%)

  

pv2

212 (-3, -1.38%)

182 (-9, -4.15%)

  

pv3

207 (-6, -2.76%)

180 (-13, -5.99%)

Kegg

98

pv1

94 (0, 0.00%)

91 (0, 0.00%)

  

pv2

92 (-4, -4.08%)

88 (-1, -1.02%)

  

pv3

92 (0, 0.00%)

83 (+1, +1.02%)

  1. Number of significant and highly significant sets within expert-annotated data (GO cellular components, MIPS-curated complexes and Kegg pathways) analyzed using Jaccard similarity. Increase/decrease from analysis using cosine similarity is shown in parenthesis.